samples 0_Raw_counts 1_After_cutadapt 2_Mitochondrial_genes_removed 3_Mapped_uniquely 4_Counts_after_PCR_deduplication 5_Nucleosome-free_Counts Aire_C313Y_WT1 55661956 55043978 48566219 37821000 8065078 1960169 Aire_C313Y_WT2 44816368 44360357 37896196 29535138 13018172 3969874 Aire_C313Y_Het3 38426419 37960406 33228069 25897613 11243194 3502653 Aire_C313Y_Het2 40858863 40340804 34096916 26497662 12426640 4853813