R version 3.3.2 (2016-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

locale:
[1] C

attached base packages:
 [1] parallel  stats4    grid      methods   tools     stats     graphics 
 [8] grDevices utils     datasets  base     

other attached packages:
 [1] knitr_1.15.1                            
 [2] png_0.1-7                               
 [3] heatmaply_0.14.1                        
 [4] viridis_0.3.1                           
 [5] plotly_4.7.1                            
 [6] DT_0.2                                  
 [7] d3heatmap_0.6.1.1                       
 [8] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2 
 [9] TxDb.Mmusculus.UCSC.mm10.knownGene_3.4.0
[10] GenomicFeatures_1.26.4                  
[11] AnnotationDbi_1.38.0                    
[12] ChIPseeker_1.12.1                       
[13] openxlsx_4.1.5                          
[14] sva_3.20.0                              
[15] genefilter_1.58.1                       
[16] mgcv_1.8-16                             
[17] nlme_3.1-128                            
[18] fdrtool_1.2.15                          
[19] stringr_1.1.0                           
[20] reshape2_1.4.2                          
[21] tidyr_0.6.0                             
[22] dplyr_0.8.5                             
[23] plyr_1.8.4                              
[24] magrittr_1.5                            
[25] amap_0.8-14                             
[26] matrixStats_0.51.0                      
[27] DESeq2_1.16.1                           
[28] SummarizedExperiment_1.4.0              
[29] Biobase_2.34.0                          
[30] GenomicRanges_1.26.4                    
[31] GenomeInfoDb_1.10.3                     
[32] IRanges_2.8.2                           
[33] S4Vectors_0.12.2                        
[34] BiocGenerics_0.22.0                     
[35] Glimma_1.2.1                            
[36] limma_3.30.13                           
[37] gridExtra_2.2.1                         
[38] ggdendro_0.1-20                         
[39] ggplot2_2.2.1                           
[40] gplots_2.17.0                           
[41] RColorBrewer_1.1-2                      
[42] BiocParallel_1.6.6                      

loaded via a namespace (and not attached):
  [1] backports_1.0.4          Hmisc_4.0-0             
  [3] fastmatch_1.1-0          igraph_1.0.1            
  [5] lazyeval_0.2.0           splines_3.3.2           
  [7] crosstalk_1.0.0          gridBase_0.4-7          
  [9] digest_0.6.10            foreach_1.4.3           
 [11] htmltools_0.3.5          GOSemSim_2.2.0          
 [13] GO.db_3.4.0              gdata_2.17.0            
 [15] memoise_1.0.0            cluster_2.0.5           
 [17] gclus_1.3.1              Biostrings_2.42.1       
 [19] annotate_1.50.0          colorspace_1.3-1        
 [21] crayon_1.3.4             RCurl_1.95-4.8          
 [23] jsonlite_1.1             iterators_1.0.8         
 [25] survival_2.40-1          glue_1.4.0              
 [27] registry_0.5             gtable_0.2.0            
 [29] zlibbioc_1.20.0          XVector_0.14.1          
 [31] webshot_0.5.0            UpSetR_1.0.3            
 [33] kernlab_0.9-25           prabclus_2.2-6          
 [35] DEoptimR_1.0-8           scales_0.4.1            
 [37] DOSE_3.2.0               mvtnorm_1.0-6           
 [39] DBI_0.5-1                edgeR_3.16.5            
 [41] Rcpp_1.0.3               plotrix_3.6-4           
 [43] viridisLite_0.3.0        xtable_1.8-2            
 [45] htmlTable_1.7            foreign_0.8-67          
 [47] mclust_5.4               Formula_1.2-1           
 [49] htmlwidgets_1.0          httr_1.2.1              
 [51] fgsea_1.2.1              fpc_2.1-10              
 [53] acepack_1.4.1            ellipsis_0.3.0          
 [55] modeltools_0.2-21        pkgconfig_2.0.1         
 [57] XML_3.98-1.5             flexmix_2.3-14          
 [59] nnet_7.3-12              locfit_1.5-9.1          
 [61] labeling_0.3             tidyselect_1.0.0        
 [63] rlang_0.4.5              munsell_0.4.3           
 [65] RSQLite_1.1-1            evaluate_0.10           
 [67] yaml_2.1.14              zip_2.0.4               
 [69] robustbase_0.92-7        caTools_1.17.1          
 [71] purrr_0.3.4              dendextend_1.5.2        
 [73] mime_0.5                 whisker_0.3-2           
 [75] DO.db_2.9                biomaRt_2.30.0          
 [77] tibble_3.0.1             geneplotter_1.50.0      
 [79] stringi_1.1.2            highr_0.6               
 [81] lattice_0.20-34          trimcluster_0.1-2       
 [83] Matrix_1.2-7.1           vctrs_0.2.4             
 [85] pillar_1.4.3             lifecycle_0.2.0         
 [87] data.table_1.10.0        bitops_1.0-6            
 [89] seriation_1.2-3          httpuv_1.3.3            
 [91] rtracklayer_1.34.2       qvalue_2.6.0            
 [93] R6_2.2.0                 latticeExtra_0.6-28     
 [95] TSP_1.1-5                KernSmooth_2.23-15      
 [97] codetools_0.2-15         boot_1.3-18             
 [99] MASS_7.3-45              gtools_3.5.0            
[101] assertthat_0.2.1         rprojroot_1.1           
[103] GenomicAlignments_1.10.0 Rsamtools_1.26.1        
[105] diptest_0.75-7           rpart_4.1-10            
[107] class_7.3-14             rmarkdown_1.3           
[109] shiny_0.14.2             base64enc_0.1-3